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Metasmith 0.18.8

  • Setup
  • Tutorials
  • API reference
  • The standard library
  • Agentic Use
  • GitHub
  • Conda
  • Docker
  • Setup
  • Tutorials
  • API reference
  • The standard library
  • Agentic Use
  • GitHub
  • Conda
  • Docker

Section Navigation

  • Representing data
  • Logistics
  • Transforms
  • Workflow generation
  • Nextflow integration
  • Executing workflows with Nextflow
  • API reference

API reference#

  • Representing data
    • Data Types
      • Motivations
      • Definitions
      • Data Type Library
      • YAML
    • Data Instances
  • Logistics
    • Representing locations
    • Locations by method of access
      • SSH
      • HTTP(S)/FTP
      • Globus
  • Transforms
    • Transform Instance Library
      • Execution context
      • Prodigal Example
      • BLAST Example
    • References
  • Workflow generation
  • Nextflow integration
  • Executing workflows with Nextflow

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